Microbiome analysis : methods and protocols /
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| Imprint: | New York : Humana Press : Springer, [2018] ©2018 |
|---|---|
| Description: | 1 online resource (xi, 324 pages) : illustrations (some color) |
| Language: | English |
| Series: | Methods in molecular biology ; volume 1849 Methods in molecular biology (Clifton, N.J.) ; v. 1849. |
| Subject: | |
| Format: | E-Resource Book |
| URL for this record: | http://pi.lib.uchicago.edu/1001/cat/bib/11718196 |
Table of Contents:
- Characterizing the deep terrestrial subsurface microbiome / Rebecca A. Daly, Kelly C. Wrighton, and Michael J. Wilkins
- Freshwater viromes : from sampling to evaluation / Catherine Putonti, Zoe Diener, and Siobhan C. Watkins
- Characterization of eukaryotic microbiome using 18S amplicon sequencing / Ana Popovic and John Parkinson
- Culture and molecular profiling of the respiratory tract microbiota / Fiona J. Whelan, Laura Rossi, Jennifer C. Stearns, and Michael G. Surette
- Methods and strategies to examine the human breastmilk microbiome / Lauren LeMay-Nedjelski, Julia Copeland, Pauline W. Wang, James Butcher, Sharon Unger, Alain Stintzi, and Deborah L. O'Connor
- Quantification of vitamin B12-related proteins in marine microbial systems using selected reaction monitoring mass spectrometry / Erin M. Bertrand
- Single-cell genomics of microbial dark matter / Christian Rinke
- 16S rRNA gene analysis with QIIME2 / Michael Hall and Robert G. Beiko
- Processing a 16S rRNA sequencing dataset with the microbiome helper workflow / Gavin M. Douglas, Andre M. Comeau, and Morgan G.I. Langille
- Normalization of microbiome profiling data / Paul J. McMurdie
- Predicting the functional potential of the microbiome from marker genes using PICRUSt / Gavin M. Douglas, Robert G. Beiko, and Morgan G.I. Langille
- Metagenome assembly and contig assignment / Qingpeng Zhang
- From RNA-seq to biological inference : using compositional data analysis in meta-transcriptomics / Jean M. Macklaim and Gregory B. Gloor
- Subsampled assemblies and hybrid nucleotide composition/differential coverage binning for genome-resolved metagenomics / Laura A. Hug
- Transkingdom networks : a systems biology approach to identify causal members of host-microbiota interactions / Richard R. Rodrigues, Natalia Shulzhenko, and Andrey Morgun
- Constructing and analyzing microbiome networks in R / Mehdi Layeghifard, David M. Hwang, and David S. Guttman
- Bayesian inference of microbial community structure from metagenomic data using BioMiCo / Katherine A. Dunn, Katelyn Andrews, Rana O. Bashwih, and Joseph P. Bielawski
- Analyzing metabolic pathways in microbiomes / Mobolaji Adeolu, John Parkinson, and Xuejian Xiong
- Sparse treatment-effect model for taxon identification with high-dimensional metagenomic data / Zhenqiu Liu and Shili Lin.