Plant comparative genomics /

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Bibliographic Details
Imprint:	New York, NY : Humana Press, 2022.
Description:	1 online resource (xi, 294 pages) : illustrations (some color).
Language:	English
Series:	Methods in molecular biology, 1940-6029 Methods in molecular biology (Clifton, N.J.),
Subject:	Plant genomes -- Laboratory manuals. Comparative genomics -- Laboratory manuals. Plant genetics -- Laboratory manuals.
Format:	E-Resource Book
URL for this record:	http://pi.lib.uchicago.edu/1001/cat/bib/13480776

Hidden Bibliographic Details
Other authors / contributors:	Pereira-Santana, Alejandro, editor. Gamboa-Tuz, Samuel David, editor. Rodríguez-Zapata, Luis Carlos, editor.
ISBN:	9781071624296 1071624296 9781071624289
Notes:	Includes index. Online resource; title from PDF title page (SpringerLink, viewed July 20, 2022).
Summary:	This detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimental procedures for trait characterization. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of vital expert implementation advice that will lead to successful results. Authoritative and practical, Plant Comparative Genomics serves as an ideal resource for researchers looking to implement comparative tools in order to explore their genomic data for their daily scientific work.
Standard no.:	10.1007/978-1-0716-2429-6

Table of Contents:

Orthology Prediction and Phylogenetic Analysis Methods in Plants
Species Tree Inference with SNP Data
High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms
NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data
An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth
POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes
Searching for Homologous Genes Using Daisychain
Detecting MicroRNAs in Plant Genomes with miRkwood
Pangenome Analysis of Plant Transcripts and Coding Sequences
Metagenomics Bioinformatic Pipeline
Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach
Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants
Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis
Isolation of Boechera stricta Developing Embryos for Hi-C
Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens
Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms
Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp.

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