Molecular modeling of nucleic acids /
Saved in:
| Imprint: | Washington, DC : American Chemical Society, c1998. |
|---|---|
| Description: | x, 435 p. : ill. (some col.) ; 24 cm. |
| Language: | English |
| Series: | ACS symposium series 682 |
| Subject: | |
| Format: | Print Book |
| URL for this record: | http://pi.lib.uchicago.edu/1001/cat/bib/2858161 |
Table of Contents:
- 1. Overview
- Quantum Mechanical Calculations and Empirical Force Field Parametrization
- 2. The Energetics of Nucleotide Ionization in Water Counterion Environments
- 3. Parameterization and Simulation of the Physical Properties of Phosphorothioate Nucleic Acids
- X-ray Crystallograpy
- 4. Crystallographic Studies of RNA Internal Loops
- 5. Hydrogen-Bonding Patterns Observed in the Base Pairs of Duplex Oligonucleotides
- Spectroscopic Studies
- 6. Structure and Stability of DNA Containing Inverted Anomeric Centers and Polarity Reversals
- 7. Conformational Analysis of Nucleic Acids: Problems and Solutions
- 8. NMR Structure Determination of a 28-Nucleotide Signal Recognition Particle RNA with Complete Relaxation Matrix Methods Using Corrected Nuclear Overhauser Effect Intensities
- 9. Molecular Modeling of DNA Using Raman and NMR Data, and the Nuclease Activity of 1,10-Phenanthroline Copper Ion
- 10. Three-Dimensional NOESY NOESY Hybrid Hybrid Matrix Refinement of a DNA Three-Way Junction
- 11. Determination of Structural Ensembles from NMR Data: Conformational Sampling and Probability Assessment
- 12. NMR Studies of the Binding of an SPXX-Containing Peptide from High-Molecular-Weight Basic Nuclear Proteins to an A-T Rich DNA Hairpin
- Secondary Structure Prediction
- 13. Thermodynamics of Duplex Formation and Mismatch Discrimination on Photolithographically Synthesized Oligonucleotide Arrays
- 14. RNA Folding Dynamics: Computer Simulations by a Genetic Algorithm
- 15. An Updated Recursive Algorithm for RNA Secondary Structure Prediction with Improved Thermodynamic
- Molecular Dynamics Simulation
- 16. Modeling of DNA via Molecular Dynamics Simulation: Structure, Bending, and Conformational Tansitions
- 17. Molecular Dynamics Simulations on Nucleic Acid Systems Using the Cornell et al. Force Field and Particle Mesh Ewald Electrostatics
- 18. Observations on the A versus B Equilibrium in Molecular Dynamics Simulations of Duplex DNA and RNA
- 19. Modeling Duplex DNA Oligonucleotides with Modified Pyrimidine Bases
- 20. How the TATA Box Selects Its Protein Partner
- 21. RNA Tectonics and Modular Modeling of RNA
- Modeling with Low-Resolution Data
- 22. Hairpin Ribozyme Structure and Dynamics
